![]() Result = self.loadstring(code_str).strip()įile “/usr/local/lib/python3.6/dist-packages/pweave/processors.py”, line 296, in loadstringįollowing the advice in this post from Biobakery’s forum, I tried to set up biobakery through conda:Ĭonda create -c biobakery -n biobakery_3.6 python=3.6 biobakery_workflows tbb=2020.2 networkx=1.11 pweave=0.25 python-leveldb Self.executed = list(map(self._runcode, self.parsed))įile “/usr/local/lib/python3.6/dist-packages/pweave/processors.py”, line 131, in _runcodeĬhunk = self.loadinline(chunk)įile “/usr/local/lib/python3.6/dist-packages/anadama2/document.py”, line 259, in loadinline ![]() Original Exception:įile “/usr/local/lib/python3.6/dist-packages/anadama2/runners.py”, line 200, in _run_task_locallyįile “/usr/local/lib/python3.6/dist-packages/anadama2/document.py”, line 315, in createįile “/usr/local/lib/python3.6/dist-packages/pweave/pweb.py”, line 198, in weaveįile “/usr/local/lib/python3.6/dist-packages/pweave/pweb.py”, line 149, in runįile “/usr/local/lib/python3.6/dist-packages/pweave/processors.py”, line 65, in run 16:15:51,496 LoggerReporter task_failed ERROR: task 0, document : Failed! Error message : Error executing action 0. (Nov 03 16:15:48) **Started ** Task 0: documentĮrror messages will be included in output documentįile “/usr/local/bin/wmgx_vis.py”, line 133, inįile “/usr/local/lib/python3.6/dist-packages/anadama2/workflow.py”, line 804, in goįile “/usr/local/lib/python3.6/dist-packages/anadama2/workflow.py”, line 836, in _handle_finished ![]() I tried the following command in the latest Docker imageīiobakery_workflows wmgx_vis -input /opt/biobakery_result_files/ -output /opt/vizualisation/ -project-name TEST I cannot get to run biobakery visualisation workflow. ![]()
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